Quantitative Profiling

Alkaloid profiling of the Chinese herbal medicine Fuzi by combination of matrix-assisted laser desorption ionization mass spectrometry with liquid chromatography-mass spectrometry

Type of publication: 
Matching Publication
Authors: 
J. Wang, R. van der Heiden, G. Spijksma, T. Reijmers, M. Wang, G. Xu, T. Hankemeier, J. van der Greef
Published in: 
Journal of Chromatography A
Date of publication: 
2009/03
Status of the publication: 
Published/accepted
Source: 
Sino Dutch Institute for Preventive and Personalized Medicine
Pages: 
2009; 1216 (11): 2169-2178
DOI: 
10.1016/j.chroma.2008.11.077
Publication data (text): 
2009

In-vivo D2O labeling in C57Bl/6 mice to quantify static and dynamic changes in cholesterol and cholesterol esters by high resolution LC mass-spectrometry

Type of publication: 
Matching Publication
Authors: 
J.M. Castro-Perez, S.F. Previs, D.G. McLaren, V. Shah, K. Herath, G. Bhat, D.G. Johns, S.P. Wang, L. Mitnaul, K. Jensen, R.J. Vreeken, T. Hankemeier, T.P. Roddy, B.K. Hubbard
Authors from the NMC: 
Published in: 
Journal of Lipid Research
Date of publication: 
2011/01
Status of the publication: 
Published/accepted
Pages: 
2011; 52: 159-169
DOI: 
10.1194/jlr.D009787
Publication data (text): 
2011

Lab-on-a-chip technologies for massive parallel data generation in the life sciences: a tutorial review

Type of publication: 
NMC Publication
Authors: 
S. Trietsch, T. Hankemeier, H.J. van der Linden
Published in: 
Chemometrics and Intelligent Laboratory Systems
Date of publication: 
2011/08
Status of the publication: 
Published/accepted

Lab-on-a-chip (LOC) technology is an important and rapidly developing research field focused on improving experimentation and analysis in the life sciences through miniaturization of full analytical systems into (monolithic) chip substrates. Since its emergence in the 1970s, the field has matured, gaining tremendous momentum in the last two decades. Miniaturization and integration of analytical processes on a chip can offer enormous advantages over existing technologies and can create a range of novel opportunities in the life sciences.

Publisher: 
Elsevier
Pages: 
2011; 108, 64-75
DOI: 
10.1016/j.chemolab.2011.03.005

Deconvolution using signal segmentation

Type of publication: 
NMC Publication
Authors: 
R.H. Jellema, S. Krishnan, M.M.W.B. Hendriks, B. Muilwijk, J.T.W.E. Vogels
Published in: 
Chemometrics and Intelligent Laboratory Systems
Date of publication: 
2010/11
Status of the publication: 
Published/accepted

Extraction of peak areas and mass spectral information from chromatography mass spectral data such as obtained in metabolomics measurements requires much effort and the quality is often subjective to the operator that handles the data at hand. In multiple file deconvolution, all samples are processed simultaneously and alignment issues are part of the modeling strategy. However, processing the total data set as a whole is an impossible task and therefore the data processing task requires segmentation. Two intertwined divide and conquer strategies are proposed.

Pages: 
2010; 104 (1): 132–139
DOI: 
10.1016/j.chemolab.2010.07.007

Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping

Type of publication: 
Matching Publication
Authors: 
F.M. van der Kloet, I. Bobeldijk, E.R. Verheij, R.H. Jellema
Published in: 
Journal of Proteome Research
Date of publication: 
2009/11
Status of the publication: 
Published/accepted
Pages: 
2009; 8 (11): 5132-5141
DOI: 
10.1021/pr900499r
Publication data (text): 
2009

The DNA damage repair protein Ku70 interacts with FOXO4 to coordinate a conserved cellular stress response

Type of publication: 
Matching Publication
Authors: 
A.B. Brenkman, N.J.F. van den Broek, P.L.J. de Keizer, D.C. van Gent, B.M.T. Burgering
Authors from the NMC: 
Published in: 
FASEB Journal
Date of publication: 
2010/11
Status of the publication: 
Published/accepted
Pages: 
2010; 24 (11): 4271-4280
DOI: 
10.1096/fj.10-158717

Stable single walled carbon nanotube-streptavidin complex for bio-recognition

Type of publication: 
Matching Publication
Authors: 
Z.F. Liu, F. Galli, K.G.H. Janssen, L.H. Jiang, H.J. van der Linden, D.C. de Geus, P. Voskamp, M.E. Kuil, R.C.L. Olsthoorn, T.H. Oosterkamp, T. Hankemeier, J.P. Abrahams
Published in: 
Journal of Physical Chemistry C
Date of publication: 
2010/03
Status of the publication: 
Published/accepted

A novel method is described for preparing single walled carbon nanotube (SWNT)−streptavidin complexes via the biotin−streptavidin recognition. The complex shows stability in 18 days, strong biotin recognition capability, and excellent loading capacity (about 1 streptavidin tetramer per 20 nm of SWNT). Capturing biotinylated DNA, fluorophores, and Au nanoparticles (NPs) on the SWNT−streptavidin complexes demonstrates their usefulness as a docking matrix, for instance for electron microscopy studies, a technique requiring a virtually electron transparent support.

Pages: 
2010; 114 (10): 4345-4352
DOI: 
10.1021/jp911441d
Publication data (text): 
2010

Solution titration by wall deprotonation during capillary filling of silicon oxide nanochannels

Type of publication: 
Matching Publication
Authors: 
K.G.H. Janssen, H.T. Hoang, J. Floris, J. de Vries, N.R. Tas, J.C.T. Eijkel, T. Hankemeier
Authors from the NMC: 
Published in: 
Analytical Chemistry
Date of publication: 
2008/11
Status of the publication: 
Published/accepted
Pages: 
2008; 80 (21), 8095–8101
DOI: 
10.1021/ac800603m
Publication data (text): 
2008

Phaseguides: A paradigm shift in microfluidic priming and emptying

Type of publication: 
Matching Publication
Authors: 
P. Vulto, S. Podszun, P. Meyer, C. Hermann, A. Manz, G. Urban
Authors from the NMC: 
Published in: 
Lab on a Chip
Date of publication: 
2011/03
Status of the publication: 
Published/accepted

Phaseguide technology gives complete control over filling and emptying of any type of microfluidic structures, independent of the chamber and channel geometry. The technique is based on a step-wise advancement of the liquid-air interface using the meniscus pinning effect. In this paper, the main effects and parameters underlying the phaseguiding principle are discussed and a demonstration is given of its potential for dead angle filling, spatially controlled phaseguide overflow and sequential phaseguide overflow, all accumulating in a passive valving approach.

Pages: 
2011; 11 (9): 1596-1602
DOI: 
10.1039/c0lc00643b

Online capillary liquid-liquid electroextraction of peptides as fast pre-concentration prior to LC-MS

Type of publication: 
Matching Publication
Authors: 
P.W. Lindenburg, R. Seitzinger, F.W.A. Tempels, U.R. Tjaden, J. van der Greef, T. Hankemeier
Authors from the NMC: 
Published in: 
Electrophoresis
Date of publication: 
2010/12
Status of the publication: 
Published/accepted
Publisher: 
Wiley
Pages: 
2010; 31 (23-24): 3903-3912
DOI: 
10.1002/elps.201000347