Quantitative Profiling

New electromigration-driven enrichment techniques for peptidomics and metabolomics

Type of publication: 
Matching Publication
Authors: 
Peter Lindenburg
Published in: 
Doctoral thesis
Date of publication: 
2012/06
Status of the publication: 
Published/accepted

In this thesis the power of electrophoretic on-line concentration procedures for peptidomics and metabolomics is demonstrated. Tow examples are given: isotachophoresis with spacer molecules and electroextraction. Electromigration is capable of enhancing selective analyte migration. Selective analyte migration can be used to increase the amount of analyte that is injected into an analytical system, while it leaves the sample volume with the contaminants behind.

Semi-automated non-target processing in GC × GC-MS metabolomics analysis: applicability for biomedical studies

Type of publication: 
Matching Publication
Authors: 
M.M. Koek, F.M. van der Kloet, R. Kleemann, T. Kooistra, E.R. Verheij, T. Hankemeier T.
Published in: 
Metabolomics
Date of publication: 
2011/03
Status of the publication: 
Published/accepted

Due to the complexity of typical metabolomics samples and the many steps required to obtain quantitative data in GC × GC-MS consisting of deconvolution, peak picking, peak merging, and integration, the unbiased non-target quantification of GC × GC-MS data still poses a major challenge in metabolomics analysis. The feasibility of using commercially available software for non-target processing of GC × GC-MS data was assessed.

Pages: 
2011; 7 (1): 1-14
DOI: 
10.1007/s11306-010-0219-6

Traditional processing strongly affects metabolite composition by hydrolysis in Rehmannia glutinosa roots

Type of publication: 
Matching Publication
Authors: 
W.T. Chang, Y.H. Choi, R. van der Heijden, M.S. Lee, M.K. Lin, H. Kong, H.K. Kim, R. Verpoorte, T. Hankemeier, J. van der Greef, M. Wang
Authors from the NMC: 
Published in: 
Chemical and Pharmaceutical Bulletin
Date of publication: 
2011/05
Status of the publication: 
Published/accepted
Pages: 
2011; 59 (5): 546-552
DOI: 
10.1248/cpb.59.546

LC/MS analysis of stratum corneum lipids: ceramide profiling and discovery

Type of publication: 
Matching Publication
Authors: 
J. van Smeden, L. Hoppel, R. van der Heijden, T. Hankemeier, R.J. Vreeken, J.A. Bouwstra
Authors from the NMC: 
Published in: 
Journal of Lipid Research
Date of publication: 
2011/06
Status of the publication: 
Published/accepted
Pages: 
2011; 52 (6): 1211-1221
DOI: 
10.1194/jlr.M014456

Comprehensive LC-MS E lipidomic analysis using a shotgun approach and its application to biomarker detection and identification in osteoarthritis patients

Type of publication: 
Matching Publication
Authors: 
J.M. Castro-Perez, J. Kamphorst, J. DeGroot, F. Lafeber, J. Goshawk, K. Yu, J.P. Shockcor, R.J. Vreeken, T. Hankemeier
Authors from the NMC: 
Published in: 
Journal of Proteome Research
Date of publication: 
2010/05
Status of the publication: 
Published/accepted
Pages: 
2010; 9 (5): 2377-2389
DOI: 
doi: 10.1021/pr901094j

Localization of fatty acyl and double bond positions in phosphatidylcholines using a dual stage CID fragmentation coupled with ion mobility mass spectrometry

Type of publication: 
Matching Publication
Authors: 
J.M. Castro-Perez, T.P. Roddy, N.M.M. Nibbering, V. Shah, D.G. McLaren, S. Previs, A.B. Attygalle, K. Herath, Z. Chen, S.P. Wang, R.J. Vreeken, D.G. Johns, T. Hankemeier
Authors from the NMC: 
Published in: 
Journal of the American Society of Mass Spectrometry
Date of publication: 
2011/09
Status of the publication: 
Published/accepted

 A high content molecular fragmentation for the analysis of phosphatidylcholines (PC) was achieved utilizing a two-stage [trap (first generation fragmentation) and transfer (second generation fragmentation)] collision-induced dissociation (CID) in combination with travellingwave ion mobility spectrometry (TWIMS).

Pages: 
2011; 22: 1552-1567
DOI: 
10.1007/s13361-011-0172-2

Identifying static and kinetic lipid phenotypes by high resolution UPLC-MS: unraveling diet-induced changes in lipid homeostasis by coupling metabolomics and fluxomics

Type of publication: 
Matching Publication
Authors: 
J.M. Castro-Perez, T.P. Roddy, V. Shah, D.G. McLaren, S.P. Wang, K. Jensen, R.J. Vreeken, T. Hankemeier, D.G. Johns, S.F. Previs, B.K. Hubbard
Authors from the NMC: 
Published in: 
Journal of Proteome Research
Date of publication: 
2011/09
Status of the publication: 
Published/accepted
Pages: 
2011; 10 (9): 4281-4290
DOI: 
10.1021/pr200480g

Attenuation of Slc27a5 gene expression followed by LC-MS measurement of bile acid reconjugation using metabolomics and a stable isotope tracer strategy

Type of publication: 
Matching Publication
Authors: 
J.M. Castro-Perez, T.P. Roddy, V. Shah, S.P. Wang, X.S. Ouyang, A. Ogawa, D.G. McLaren, M. Tadin-Strapps, M.J. Robinson, S.R. Bartz, B. Ason, Y. Chen, S.F. Previs, K.K. Wong, R.J. Vreeken, D.G. Johns, B.K. Hubbard, T. Hankemeier, L. Mitnaul
Authors from the NMC: 
Published in: 
Journal of Proteome Research
Date of publication: 
2011/10
Status of the publication: 
Published/accepted
Pages: 
2011; 10 (10): 4683-4691
DOI: 
10.1021/pr200475g

Anacetrapib promotes reverse cholesterol transport and bulk cholesterol excretion in Syrian golden hamsters

Type of publication: 
Matching Publication
Authors: 
J. Castro-Perez, F. Briand, K. Gagen, S.P. Wang, Y. Chen, D.G. McLaren, V. Shah, R.J. Vreeken, T. Hankemeier, T. Sulpice, T.P. Roddy, B.K. Hubbard, D.G. Johns
Authors from the NMC: 
Published in: 
Journal of Lipid Research
Date of publication: 
2011/11
Status of the publication: 
Published/accepted
Pages: 
2011; 52 (11): 1965-1973
DOI: 
10.1194/jlr.M016410

ApoB siRNA-induced liver steatosis is resistant to clearance by the loss of fatty acid transport protein 5 (Fatp5)

Type of publication: 
Matching Publication
Authors: 
B. Ason, J. Castro-Perez, S. Tep, A. Stefanni, M. Tadin-Strapps, T. Roddy, T. Hankemeier, B. Hubbard, A.B. Sachs, M.W. Flanagan, N.A. Kuklin, L.J. Mitnaul
Authors from the NMC: 
Published in: 
Lipids
Date of publication: 
2011/11
Status of the publication: 
Published/accepted
Pages: 
2011; 46 (11): 991-1003
DOI: 
10.1007/s11745-011-3596-3.