Quantitative Profiling

The potential of electrophoretic sample pretreatment techniques and new instrumentation for bioanalysis, with a focus on peptidomics and metabolomics

Type of publication: 
Matching Publication
Authors: 
P.W. Lindenburg, R. Ramautar, T. Hankemeier
Authors from the NMC: 
Published in: 
Bioanalysis
Date of publication: 
2013/11
Status of the publication: 
Published/accepted
Pages: 
2013; 5 (22): 2785-2801
DOI: 
10.4155/bio.13.254

Elastomeric microvalves as tunable nanochannels for concentration polarization

Type of publication: 
NMC Publication
Authors: 
J.W. Quist, S.J. Trietsch, P. Vulto, T. Hankemeier
Published in: 
Lab on a Chip
Date of publication: 
2013/10
Status of the publication: 
Published/accepted
Pages: 
2013; 13 (24): 4810-4815
DOI: 
10.1039/c3lc50658d

Recent methodology in the phytochemical analysis of ginseng

Type of publication: 
Matching Publication
Authors: 
N. Angelova, H.W. Kong, R. van der Heijden, S.Y. Yang, Y.H. Choi, H.K. Kim, M. Wang, T. Hankemeier, J. van der Greef, G. Xu, R. Verpoorte
Authors from the NMC: 
Published in: 
Phytochemical Analysis
Date of publication: 
2008/01
Status of the publication: 
Published/accepted

This review summarises the most recent developments in ginseng analysis, in particular the novel approaches in sample pre-treatment and the use of high-performance liquid-chromatography-mass spectrometry. The review also presents novel data on analysing ginseng extracts by nuclear magnetic resonance spectroscopy and high-resolution mass spectrometry (Fourier transform mass spectrometry) in the context of metabolomics.

Pages: 
2008; 19 (1): 2-16
DOI: 
10.1002/pca.1049

The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fluid (CSF)

Type of publication: 
Matching Publication
Authors: 
T. Rosenling, C.L. Slim, C. Christin, L. Coulier, S. Shi, M.P. Stoop, J. Bosman, F. Suits, P.L. Horvatovich, N. Stockhofe-Zurwieden, R.J. Vreeken, T. Hankemeier, A.J. van Gool, T.M. Luider, R. Bischoff
Authors from the NMC: 
Published in: 
Journal of Proteome Research
Date of publication: 
2009/12
Status of the publication: 
Published/accepted
Pages: 
2009; 8 (12): 5511-5522
DOI: 
10.1021/pr9005876

Metabolic profiling of ultrasmall sample volumes with GC/MS: from microliter to nanoliter samples

Type of publication: 
Matching Publication
Authors: 
M.M. Koek, F. Bakels, W. Engel, A. van den Maagdenberg, M.D. Ferrari, L. Coulier, T. Hankemeier
Published in: 
Analytical Chemistry
Date of publication: 
2010/01
Status of the publication: 
Published/accepted
Pages: 
2010; 82 (1): 156-162
DOI: 
10.1021/ac9015787

Solvent exchange module for LC-NMR hyphenation using machine vision-controlled droplet evaporation

Type of publication: 
NMC Publication
Authors: 
J.W. Schoonen, P. Vulto, N. de Roo, J. van Duynhoven, H.J. van der Linden, T. Hankemeier
Published in: 
Analytical Chemistry
Date of publication: 
2013/06
Status of the publication: 
Published/accepted
Pages: 
2013; 85 (12): 5734-5739
DOI: 
10.1021/ac401068j

Microfluidic titer plate for stratified 3D cell culture

Type of publication: 
NMC Publication
Authors: 
S.J. Trietsch, G.D. Israëls, J. Joore, T. Hankemeier, P. Vulto
Published in: 
Lab on a Chip
Date of publication: 
2013/08
Status of the publication: 
Published/accepted
Pages: 
2013; 13 (18): 3548-3554
DOI: 
10.1039/c3lc50210d

Insulin/IGF-1-mediated longevity is marked by reduced protein metabolism

Type of publication: 
Matching Publication
Authors: 
G.J. Stout, E.C.A. Stigter, P.B. Essers, K.W. Mulder, A. Kolkman, D.S. Snijders, N.J.F. van den Broek, M.C. Betist, H.C. Korswagen, A.W. MacInnes, A.B. Brenkman
Published in: 
Molecular Systems Biology
Date of publication: 
2013/07
Status of the publication: 
Published/accepted

Mutations in the daf-2 gene of the conserved Insulin/Insulin-like Growth Factor (IGF-1) pathway double the lifespan of the nematode Caenorhabditis elegans. This phenotype is completely suppressed by deletion of Forkhead transcription factor daf-16. To uncover regulatory mechanisms coordinating this extension of life, we employed a quantitative proteomics strategy with daf-2 mutants in comparison with N2 and daf-16; daf-2 double mutants.

DOI: 
10.1038/msb.2013.35

Three-phase electroextraction: a new (online) sample purification and enrichment method for bioanalysis

Type of publication: 
NMC Publication
Authors: 
R-J. Raterink, P.W. Lindenburg, R.J. Vreeken, T. Hankemeier
Published in: 
Analytical Chemistry
Date of publication: 
2013/08
Status of the publication: 
Published/accepted

The migration and at the same time enrichment of analytes from a liquid aqueous sample donor phase through an immiscible organic solvent layer acting as a filter

Pages: 
2013; 85 (16): 7762-7768
DOI: 
10.1021/ac4010716

Pre-processing liquid chromatography/high-resolution mass spectrometry data: extracting pure mass spectra by deconvolution from the invariance of isotopic distribution

Type of publication: 
NMC Publication
Authors: 
S. Krishnan, E.E.R. Verheij, R.C. Bas, M.M.W.B. Hendriks, T. Hankemeier, U. Thissen, L. Coulier
Published in: 
Rapid Communications in Mass Spectrometry
Date of publication: 
2013/05
Status of the publication: 
Published/accepted

Mass spectra obtained by deconvolution of liquid chromatography/high-resolution mass spectrometry (LC/HRMS) data can be impaired by non-informative mass-over-charge (m/z) channels. This impairment of mass spectra can have significant negative influence on further post-processing, like quantification and identification.

A metric derived from the knowledge of errors in isotopic distribution patterns, and quality of the signal within a pre-defined mass chromatogram block, has been developed to pre-select all informative m/z channels.

Pages: 
2013; 27 (9): 917-923
DOI: 
10.1002/rcm.6517