Plant associate projects

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

Type of publication: 
Matching Publication
Authors: 
S.A. Khan, P.Y. Chibon, R.C.H. de Vos, B.A. Schipper, E. Walraven, J. Beekwilder, T. van Dijk, R. Finkers, R.G. Visser, E.W. van de Weg, A. Bovy, A. Cestaro, R. Velasco, E. Jacobsen, H.J. Schouten
Authors from the NMC: 
Published in: 
Journal of Experimental Botany
Date of publication: 
2012/05
Status of the publication: 
Published/accepted
Pages: 
2012; 63 (8) 2895-2908
DOI: 
10.1093/jxb/err464

A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties

Type of publication: 
Matching Publication
Authors: 
M.N. Calingacion, C. Boualaphanh, V. D. Daygon, R. Anacleto, R. Sackville Hamilton, B. Biais, C. Deborde, M. Maucourt, A. Moing, R. Mumm, R.C.H. de Vos, A. Erban, J. Kopka, T. H. Hansen, K.H. Laursen, J.K. Schjoerring, R.D. Hall, M.A. Fitzgerald
Authors from the NMC: 
Published in: 
Metabolomics
Date of publication: 
2012/10
Status of the publication: 
Published/accepted

Using a novel approach combining four complementary metabolomic and mineral platforms with genome-wide genotyping at 1536 single nucleotide polymorphism (SNP) loci, we have investigated the extent of biochemical and genetic diversity in three commercially-relevant waxy rice cultivars important to food production in the Lao People’s Democratic Republic (PDR).

Pages: 
2012; 8, 771-783
DOI: 
10.1007/s11306-011-0374-4

Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101

Type of publication: 
Matching Publication
Authors: 
J.E. van de Mortel, R.C.H. de Vos, E. Dekkers, A. Pineda, L. Guillod, K. Bouwmeester, J.J.A. van Loon, M. Dicke, J.M. Raaijmakers
Authors from the NMC: 
Published in: 
Plant Physiology
Date of publication: 
2012/12
Status of the publication: 
Published/accepted
Pages: 
2012; 160, 2173-2188
DOI: 
10.1104/pp.112.207324

Canonical correlation analysis of multiple sensory directed metabolomics data blocks reveals corresponding parts between data blocks

Type of publication: 
NMC Publication
Authors: 
T.G. Doeswijk, J.A. Hageman, J.A. Westerhuis, Y. Tikunov, A. Bovy, F.A. van Eeuwijk
Published in: 
Chemometrics and Intelligent Laboratory Systems
Date of publication: 
2011/07
Status of the publication: 
Published/accepted

Multiple analytical platforms are frequently used in metabolomics studies. The resulting multiple data blocks contain, in general, similar parts of information which can be disclosed by chemometric methods. The metabolites of interest, however, are usually just a minor part of the complete data block and are related to a response of interest such as quality traits. Concatenation of data matrices is frequently used to simultaneously analyze multiple data blocks.

Pages: 
2011; 107 (2): 371–376
DOI: 
10.1016/j.chemolab.2011.05.010

Production of novel antioxidative phenolic amides through heterologous expression of the plant's chlorogenic acid biosynthesis genes in yeast

Type of publication: 
Matching Publication
Authors: 
A. Moglia, C. Comino, S. Lanteri, R.C.H. de Vos, P. de Waard, T.A. van Beek, L. Goitre, S.F. Retta, J. Beekwilder
Authors from the NMC: 
Published in: 
Metabolic Engineering
Date of publication: 
2010/05
Status of the publication: 
Published/accepted

Phenolic esters like chlorogenic acid play an important role in therapeutic properties of many plant extracts. We aimed to produce phenolic esters in baker's yeast, by expressing tobacco 4CL and globe artichoke HCT. Indeed yeast produced phenolic esters. However, the primary product was identified as N-(E)-p-coumaroyl-3-hydroxyanthranilic acid by NMR. This compound is an amide condensation product of p-coumaric acid, which was supplied to the yeast, with 3-hydroxyanthranilic acid, which was unexpectedly recruited from the yeast metabolism by the HCT enzyme.

Publisher: 
Elsevier
Pages: 
2010; 12 (3): 223-232
DOI: 
10.1016/j.ymben.2009.11.003
Publication data (text): 
2010

Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice

Type of publication: 
Matching Publication
Authors: 
G.S. Song, H.L. Zhai, Y.G. Peng and others
Published in: 
Molecular Plant
Date of publication: 
2010/08
Status of the publication: 
Published/accepted

Heterosis is a biological phenomenon whereby the offspring from two parents show improved and superior performance than either inbred parental lines. Hybrid rice is one of the most successful apotheoses in crops utilizing heterosis.

Pages: 
2010; 3 (6): 1012-1025
DOI: 
10.1093/mp/ssq046
Publication data (text): 
2010

Antioxidants, phenolic compounds, and nutritional quality of different strawberry genotypes

Type of publication: 
Matching Publication
Authors: 
S. Tulipani, B. Mezzetti, F. Capocasa, S. Bompadre, J. Beekwilder, R.C.H. de Vos, E. Capanoglu, A. Bovy, M. Battino
Authors from the NMC: 
Published in: 
Journal of Agricultural and Food Chemistry
Date of publication: 
2008/02
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Strawberry contains high levels of micronutrients and phytochemical compounds. These exhibit functional roles in plant growth and metabolism and are also essential for the nutritional and organoleptic qualities of the fruit. The aim of the present work was to better characterize the phytochemical and antioxidant profiles of the fruit of nine different genotypes of strawberry, by measuring the total flavonoid, anthocyanin, vitamin C, and folate contents. Cultivar effects on the total antioxidant capacities of strawberries were also tested.

Pages: 
2008; 56 (3): 696-704
DOI: 
10.1021/jf0719959
Publication data (text): 
2008

Changes in antioxidant and metabolite profiles during production of tomato paste

Type of publication: 
Matching Publication
Authors: 
E. Capanoglu, J. Beekwilder, D. Boyacioglu, R.D. Hall, R.C.H. de Vos
Authors from the NMC: 
Published in: 
Journal of Agricultural and Food Chemistry
Date of publication: 
2008/02
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Tomato products and especially concentrated tomato paste are important sources of antioxidants in the Mediterranean diet. Tomato fruit contain well-known antioxidants such as vitamin C, carotenoids, flavonoids, and hydroxycinnamic acids. The industrial processing of this fruit into tomato paste involves several treatments that potentially affect the final profile of antioxidants and other metabolites in the commercial product.

Pages: 
2008; 56 (3): 964-973
DOI: 
10.1021/jf072990e
Publication data (text): 
2008

Boosting beneficial phytochemicals in vegetable crop plants

Type of publication: 
Matching Publication
Authors: 
E.G.W.M. Schijlen, J. Beekwilder, R.D. Hall, I.M. van der Meer
Authors from the NMC: 
Published in: 
CAB REVIEWS: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources
Date of publication: 
2008/03
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Plants contain an astonishing diversity of biochemical pathways, which eventually result in the production and accumulation of innumerable phytochemical compounds. From an historical point of view, people have primarily selected plants on the basis of traits that are linked to the presence of beneficial phytochemicals.

Pages: 
2008; 3, 025, 21 pp.
Publication data (text): 
2008